Genome-wide simulation for SparsePro paper
收藏NIAID Data Ecosystem2026-03-13 收录
下载链接：
https://figshare.com/articles/dataset/Genome-wide_simulation_for_SparsePro_paper/20539947
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资源简介：
Genome-wide simulation data for SparsePro paper:
K100_W0.zip: contains 22 replicates of chromosomes simulated under no functional enricment.
K100_W1.zip: contains 22 replicates of chromosomes simulated under W=1 (log-relative enrichment).
K100_W2.zip: contains 22 replicates of chromosomes simulated under W=2 (log-relative enrichment).
22.idx.anno: annotation file for running functionally informed fine-mapping methods.
22.dict: dictionary for converting rsid to chr.pos.a1.a2
run_sparsepro_susie_ukb.sh: bash command for running SparsePro-/+ and SuSiE on the simulated data.
run_susie_poly.sh: bash command for running PolyFun-informed SuSiE.
susie_poly.py: script for running PolyFun-informed SuSiE.
plot_gw_simulation.ipynb: scripts for plotting genome-wide simulation results.
sparsepro_ukb.py: script for running SparsePro-/+
susie_ukb.py: script for running SuSiE
创建时间：
2022-08-26
