Size of the completions and capability to produce biomass of GEMs in the benchmark of 3,600 degraded <i>E. coli</i> GEMs after their completion with Meneco, fastGapFill and MIRAGE.
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Between 10% and 40% of reactions were removed from E. coli iJR904 reference network in order to block the FBA-based production of 40 different biomass functions. For each degraded GEM, both the Meneco and fastGapFill tools were used to restore the producibility of the biomass by picking reactions from the MetaCyc database. For 10% of the degraded GEMs in the benchmark, the MIRAGE tool was also tested.
创建时间：
2017-02-10
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