Additional file 1 of GWAS revealed effect of genotype × environment interactions for grain yield of Nebraska winter wheat

Additional file 1: Table S1. Pedigree information for F 3:6 Nebraska Duplicate Nursery winter wheat. Table S2. List of SNPs generated from GBS data. Table S3. The genotypes performance for GY under nine environments. Table S4. Average high and low monthly temperatures, total monthly precipitation, and total snowfall in all environments except Grant and Kansas for growing season (2016 /2017). Table S5. Details of GWAS analysis for grain yield using mixed linear model (MLM) at the significance level of 5% bonferroni correction using 11,991 SNPs. Table S6. gene annotation and candidate genes for the high LD genomic regions. Table S7. The presence (1) and absence (0) of all alleles associated with high yielding detected by GWAS in 13 selected genotypes in all environments. Table S8. The distance matrix based on genotypic data between the best high yielding genotypes. Table S9. The different allele effects matrix among the 13 selected genotypes.