(high-temp) No 5. Aplha diversity (16S rRNA/ITS) Output

Output files from the No 5. Aplha diversity Workflow page of the SWELTR high-temp study. In this workflow we used Hill numbers to assess alpha diversity across temperature treatments. alpha_wf.rdata: contains all variables and phyloseq objects from 16s rRNA and ITS ASV alpha diversity assessment. To see the Objects, in R run load("alpha_wf.rdata", verbose=TRUE) Additional files: For convenience, we also include individual phyloseq objects (collected in zip files) where Hill numbers have been added to the sample data tables. ITS (its_alpha_objects.zip): its18_ps_work.rds: phyloseq object for the FULL (unfiltered) ITS data. its18_ps_filt.rds: phyloseq object for the Arbitrary filtered ITS data. its18_ps_perfect.rds: phyloseq object for the PERfect ITS data. its18_ps_pime.rds: phyloseq object for the PIME ITS data. 16S rRNA (ssu_alpha_objects.zip): ssu18_ps_work.rds: phyloseq object for the FULL (unfiltered) 16S rRNA data. ssu18_ps_filt.rds: phyloseq object for the Arbitrary filtered 16S rRNA data. ssu18_ps_perfect.rds: phyloseq object for the PERfect 16S rRNA data. ssu18_ps_pime.rds: phyloseq object for the PIME 16S rRNA data. Source code for the workflow can be found here: https://github.com/sweltr/high-temp/blob/master/alpha.Rmd