Additional file 1: Table S1. of Genome-wide analysis of basic helix-loop-helix (bHLH) transcription factors in Brachypodium distachyon

Consensus motifs of bHLH domains. Table S2. The primers used in the qRT-PCR. Table S3. Characteristic features of bHLH Transcription factor gene family identified in Brachypodium distachyon. Table S4. The Ka/Ks ratios and estimated divergence time for tandemly duplicated BdbHLH genes. Table S5. The Ka/Ks ratios and estimated divergence time for segmentally duplicated BdbHLH genes. Table S6. The Ka/Ks ratios and estimated divergence time for orthologous bHLH genes between Brachypodium distachyon and rice. Table S7. The Ka/Ks ratios and estimated divergence time for orthologous bHLH genes between Brachypodium distachyon and maize. Table S8. The Ka/Ks ratios and estimated divergence time for orthologous bHLH genes between Brachypodium distachyon and sorghum. Table S9. GO annotations of BdbHLHs. Table S10. GO descriptions of BdbHLHs. Table S11. Detailed information of interaction network of BdbHLH with other proteins. Table S12. Predicted DNA Binding Characteristics of the bHLH Domain in BdbHLH Proteins. Table S13. Summary of the predicted functions of BdbHLHs by comparative analysis with homologous bHLHs in Arabidopsis and rice. Table S14. The cis-regulatory elements in the promoter region of 29 BdbHLH genes. (XLSX 237Â kb)