Brachiopod genome unveils the evolution of BMP signalling in bilaterian body patterning

This dataset accompanies the manuscript "Brachiopod genome unveils the evolution of BMP signalling in bilaterian body patterning" and contains the following files. (1) Chromosome-level genome (v3.0)- lan_genome_v3.0.fa (2) Structural annotation files- lan_v3.0_braker.gff (BRAKER gene model annotation, GFF format)- lan_v3.0_braker.gtf (BRAKER gene model annotation, GTF format)- lan_v3.0_braker.log (BREAKE annotation log)- lan_v3.0_cds.fasta (coding sequences)- lan_v3.0_pep.fasta (protein sequences)- lan_v3.0_repeat.gff (RepeatMasker annotation, GFF format)- lan_v3.0_repeat.tbl (RepeatMasker statistics) (3) Functional annotation files- lan_v3.0.diamond.blastp.out (UniProt best-hit annotation: Diamond blast against UniProt)- lan_v3.0.domtblout (Pfam annotation)- lan_v3.0_interproscan.tsv (InterProScan annotation)- lan_v3.0.eggnog.emapper.annotations (EggNOG annotation)- lan_v3.0.eggnog.emapper.hits (EggNOG annotation)- lan_v3.0.eggnog.emapper.seed_orthologs (EggNOG annotation)- lan_v3.0_kofam.tsv (KOfam annotation) (4) Transcriptome files- lan_transcriptome_nucl.fa (transcriptome assembly, nucleotide sequences)- lan_transcriptome_prot.fa (transcriptome assembly translated into protein sequences)- lan_transcriptome_Swiss-Prot.outfmt6 (BLAST best hits against the UniProt Swiss-Prot database)- trans_counts_LG.TMM.EXPR.matrix (gene expression matrix at late gastrula stage under BMP signalling manipulation)- trans_counts_PCL.TMM.EXPR.matrix (gene expression matrix at larval stage under BMP signalling manipulation) (5) Zeiss LSM files- Lan_Larval_Chitin_DMSO_control_01.lsm (confocal z-stack of a larva stained with a chitin-binding probe; DMSO control)- Lan_Larval_Chitin_LDN193189_03.lsm (confocal z-stack of a larva stained with a chitin-binding probe; treated with LDN-193189)- Lan_Larval_Chitin_K02288_01.lsm (confocal z-stack of a larva stained with a chitin-binding probe; treated with K02288)- Lan_Larval_Chitin_mBMP4_01.lsm (confocal z-stack of a larva stained with a chitin-binding probe; treated with mouse recombinant BMP4)