Additional file 1 of Genome-wide association mapping and genomic prediction for kernel color traits in intermediate wheatgrass (Thinopyrum intermedium)

Additional file 1. Scripts and additional tables generated during the course of the study. There are four sheets in this file. Name and description of each sheet is provided below: ImageJ macro: Macro script used in the ImageJ program to obtain L*, a*, and b* values from seed images. Phenotypic data: L*, a*, b* values obtained from ImageJ and visual rating scores pre-data adjustment. Trait variance components: Genetic and non-genetic variance components generated using a mixed model equation. Narrow sense heritabilities: Narrow sense trait heritability estimates for the kernel color traits. PC model selection BIC values: BIC values calculated by GAPIT when using up to 10 PC axes as cofactors in the GWAS model to evaluate model fit. NCBI BLAST results: Protein BLAST results when intermediate wheatgrass candidate gene sequences were searched against the NCBI protein database. BLAST with wheat R genes: BLAST results when intermediate wheatgrass candidate gene sequences were searched against the three genes in wheat known to be involved in controlling kernel color in wheat.