The Bacillus antharcis cgMLST scheme and the typing results of 584 strains produced with ChewBBACA.

The folder contains the <i>Bacillus antharcis</i> cgMLST genes and the typing results of 584 <i>B. anthracis</i> strains. The schema was originally created with SeqSphere and formatted for use with the chewBBACA software as an alternative command line-based open-source program for allele calling. The snakemake application of chewBBACA, called chewieSnake v2.0.0-52-g01c32bb (accessed in July 2020; https://gitlab.com/bfr_bioinformatics/chewieSnake) was used, and the typing results are summarised in an html report written by Carlus Deneke. <br>This scheme is also available and can be used via PubMLST database (https://pubmlst.org/organisms/bacillus-cereus). <br>

本数据集文件夹包含炭疽芽孢杆菌（*Bacillus antharcis*）的核心基因组多位点序列分型（core genome multilocus sequence typing，cgMLST）基因，以及584株炭疽芽孢杆菌（*B. anthracis*）菌株的分型结果。该分型方案最初由SeqSphere软件构建，并针对chewBBACA软件完成格式适配；chewBBACA是一款基于命令行的开源等位基因分型工具，可作为SeqSphere的替代方案。本次分析使用了chewBBACA配套的Snakemake工作流工具chewieSnake v2.0.0-52-g01c32bb（检索于2020年7月，来源链接：https://gitlab.com/bfr_bioinformatics/chewieSnake），分型结果由Carlus Deneke整理为HTML报告并汇总。<br>该分型方案亦可通过PubMLST数据库（https://pubmlst.org/organisms/bacillus-cereus）获取并使用。<br>