Rare allele scan QTL effects in teosinte and maize.

SNP, parent name, and haplotype number for QTL peak joined together (Marker), proportion of trait variance due to additive effect of this haplotype vs. all others (r2_A), proportion of trait variance due to dominance effect of this haplotype (r2_D), proportion of trait variance due to the combined additive and dominance effects of this haplotype vs. all others (r2_AD), additive effect of this haplotype allele vs. all others (a_effect), p-value associated with the additive effect (a_pval), t-value associated with the additive effect (a_tval), dominance effect of this haplotype (d_effect), p-value associated with the dominance effect (d_pval), t-value associated with the dominance effect (d_tval), number of heterozygotes for this haplotype (N_het), number of homozygotes for this haplotype (N_hom), peak SNP, parent, haplotype number, chromosome, physical position of SNP on AGP version 4 of the B73 reference sequence (pos_Agpv4), cM position of SNP, SNP defining left side of QTL interval (Pos_start), genetic position of SNP defining left side of QTL support interval (cM_start), physical position of SNP defining left side of QTL support interval (Pos_start), SNP defining right side of QTL interval (SNP_end), genetic position of SNP defining right side of QTL support interval (cM_end), physical position of SNP defining right side of QTL support interval (Pos_end), population, trait group, and number of GWAS associations identified by Chen et al. [44] for same trait and population inside the support interval (N.GWAS.hits). (CSV)