Additional file 1 of An atlas of cell-type-specific interactome networks across 44 human tumor types

Additional file 1: Table S1. The collection of scRNA-seq data used in this study. Table S2. The scRNA-seq datasets of solid tumor samples used in this study. Table S3. The scRNA-seq datasets of hematologic malignancy samples used in this study. Table S4. Curated marker genes for different cell types. Table S5. Curated marker genes for different immune cell subsets. Table S6. Information of four reference networks used in this study. Table S7. Curated COSMIC somatic mutation data for each solid tumor type. Table S8. Number of nodes and edges of cell-type-specific networks in each tumor type. Table S9. Number of nodes and edges of cell-subset-specific networks in pan-tumor TIMEs. Table S10. DisGeNET disease gene sets used in network performance evaluation. Table S11. Canonical marker genes for 8 cell subsets in myeloid cells of pan-tumor TIMEs. Table S12. The data collection of six ICB therapy cohorts.