Supporting data for the manuscript "Nerpa: a tool for discovering biosynthetic gene clusters of nonribosomal peptides"

Preprocessed structures of nonribosomal peptides [NRPs] and genomic sequences (reference and representative genomes, biosynthetic gene clusters [BGCs]) used in the benchmark experiments in the Nerpa paper.

Files description

mibig_nrp_bacteria_preprocessed.tar.gz contains the preprocessed dataset of 194 bacterial NRP BGCs from the MIBiG database.

mibig_nrp_bacteria_summary.tsv contains metadata for the MIBiG-NRP dataset.

bacterial_ref_and_repr_genomes_20210604_preprocessed.tar.gz contains the preprocessed dataset of 13,399 reference and representative bacterial genomes from the NCBI RefSeq database (retrieved on 2021/06/04).

bacterial_ref_and_repr_genomes_20210604_summary.txt contains metadata for the RefSeq dataset.

pnrpdb_preprocessed.info contains the Nerpa-preprocessed pNRPdb database, a database of 8,368 known and putative NRP structures.

pnrpdb_summary.tsv contains the pNRPdb database metadata.