h5 matrix files from the paper: "Detecting chromosomal rearrangements in boars using Hi-C"

Hi-C contact matrices (h5 format) generated by HiCExplorer. The files contain the interactions of each locus in the genome with other loci.

Frozen_hic_matrix.h5: This file contains the contact matrices from a control boar blood sample that had been frozen and then thawed before being used to generate a Hi-C library.

Fresh_hic_matrix.h5: This file contains the contact matrices from a fresh control boar blood sample that was used to generate a Hi-C library.

RT_hic_matrix.h5: This file contains the contact matrices from a blood sample from a boar with an RT, that had been frozen and then thawed before being used to generate a Hi-C library.

ginteraction files:

Frozen_hic_matrix500kb_normalised_ICE_corrected_intermediate_threshold_chronly_matrix.ginteractions: This file contains the ginteractions from the frozen control. boar sample.

Fresh_hic_matrix500kb_normalised_ICE_corrected_intermediate_threshold_chronly_matrix.ginteractions: This file contains the ginteractions from the fresh control. boar sample.

RT_hic_matrix500kb_normalised_ICE_corrected_intermediate_threshold_chronly_matrix.ginteractions: This file contains the ginteractions from the frozen RT sample.