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Exploring Host-Binding Machineries of Mycobacteriophages with AlphaFold2

Name: Exploring Host-Binding Machineries of Mycobacteriophages with AlphaFold2
Creator: University College Cork; CNRS
Published: 2023-03-02T00:00:00+08:00

Zenodo2023-03-02 更新2026-04-07 收录

蛋白质结构预测

噬菌体-宿主互作

数据链接：

https://zenodo.org/record/7693514 数据链接链接失效反馈

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资源简介：

Coordinates of AlphaFold2 predicted structures presented in the publication "Exploring Host-Binding Machineries of Mycobacteriophages with AlphaFold2".

应用场景：

提供机构：

University College Cork; CNRS

创建时间：

2023-03-02

蛋白质结构预测

梅毒病原体功能注释

Table S4. Comparison of T. pallidum primary and tertiary structure-based functional annotations using only the top-ranked Phyre2 model template for each protein comparison. (XLSX 33 kb)

NIAID Data Ecosystem40

Helical packing arrangement decoy discrimination using a data set of 71 sequences with 2 or more TM helices (n = 71) and a data set of 57 sequences with 3 or more helices (n = 57).

蛋白质结构预测

跨膜螺旋堆积判别

Accuracy reflects the frequency at which the native or native model helical packing arrangement achieved the highest score compared to the decoy set.

NIAID Data Ecosystem30

RIPseq of VP882 phage activation in V. cholerae. RIPseq of VP882 phage activation in V. cholerae

噬菌体-宿主互作

转录组学分析

Many, if not all, bacteria use quorum sensing (QS) to control gene expression and collective behaviours, and more recently QS has also been discovered in bacteriophages (phages). Phages can produce co

NIAID Data Ecosystem00

ΦCbk infection RNA-seq data.

噬菌体-宿主互作

细菌转录调控

The xenobiotic response element (XRE) family of transcription factors (TFs), which are commonly encoded by bacteria and bacteriophage, regulate diverse features of bacterial cell physiology and impact

NIAID Data Ecosystem40

Model parameters from Equation 1 where parameters are allowed to vary between cultures, fitted to data from the interaction experiments.

噬菌体-宿主互作

剂量依赖性结合率

Estimates were obtained by maximum likelihood as described in the text; parameter notation is as in Table 1. The total AIC for this model is 4948.075. There is a strong positive relationship between t

NIAID Data Ecosystem10

Exploring Host-Binding Machineries of Mycobacteriophages with AlphaFold2

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