Metagenomic Profiling of AMR in Wastewater: Taxonomic Diversity, ARGs and Mobile Genetic Elements Across Four Indian Cities

This dataset contains the analysis scripts, processed data tables, intermediate results, source data and figures generated from an analysis of publicly available wastewater metagenomic sequencing data from four metropolitan cities in India. The analysis characterizes bacterial taxonomic composition and diversity, read based antimicrobial resistance gene (ARG) profiles, and MAG based ARG associations with mobile genetic elements. Analyses include species level abundance normalization, richness, Shannon and Simpson diversity, Aitchison distance based principal coordinates analysis, ARG abundance profiling, and ARG–MGE co-occurrence analysis within high quality metagenome assembled genomes.