2026-08-07_Genomad-Results-Hongzhe-Six-Methods

Genomad results uploaded 2026-08-05 for 10 samples performed under 6 different methods: Virus-like particle enrichment containing DNA and RNA extraction using reverse transcriptase SSIV and sequenced on a NovaSeq using a 600 cycle kit with paired end 300x300 following Duan VP4 protocol (Processed by the Bushman Lab in 2025/2026) Virus-like particle enrichment containing DNA and RNA extraction using reverse transcriptase SSIII and sequenced on a NextSeq using a 300 cycle kit with paired end 150x150 following Duan VP4 protocol (Processed by the Bushman Lab in 2025/2026) Virus-like particle enrichment DNA fraction using GenomiPhi V2 amplification sequenced on a HiSeq using a 300 cycle with paired end 150x150 following the Liang et al. protocol (Processed by the Bushman Lab in 2018/2019) Virus-like particle enrichment RNA fraction using reverse transcriptase SSIII and polymerase AccuPrime V2 amplification sequenced on a HiSeq using a 300 cycle with paired end 150x150 following the Liang et al. protocol (Processed by the Bushman Lab in 2018/2019) Metagenomic Sequencing DNA fraction with no amplification sequenced on a HiSeq using a 300 cycle with paired end 150x150 following the Liang et al. protocol (Processed by the Bushman Lab in 2018/2019) Metagenomic Sequencing DNA fraction with no amplification sequenced on a NovaSeq using a 300 cycle with paired end 150x150 following the Moustafa et al. protocol (Processed by the Moustafa Lab in 2025/2026)