CA1 neuron cell typing results of pciSeq (probabilistic cell typing by in situ sequencing)

For files in csv format, please go to https://doi.org/10.17045/sthlmuni.10318610.v1<br>This fileset contains pciSeq analysis results for 28 hippocampi in the study<b> </b> <b>"Probabilistic cell typing enables fine mapping of closely related cell types <i>in situ</i></b>". It includes 28 tiff images of CA1 region only, 14 jpeg images of coronal sections, 28 MATLAB iss object files with cell calling results and 1 MATLAB GeneSet object containing scRNA-seq data used as prior in cell mapping.<br><br>* .mat filesEach mat file contains one MATLAB iss class (https://github.com/kdharris101/iss) object for one hippocampus. It contains all cell-calling as well as base-calling results. <br><br>* .tif imagesEach tif image is the DAPI stain from one hippocampal CA1 region, with DAPI-based segmentation lines shown on top of the grayscale image. <br><br>* .jpg imagesEach jpg image is stitched DAPI image of a full coronal section. <br><br><br>