Identification of putative archaeal transporter families.

Family: protein family identifier. Sequences: the number of archaeal proteins within a given protein family. Crossover: the percentage of proteins within a given family that were identified by TCDB HMM searches. TM domains: the median number of transmembrane domains per protein across sequences within a protein family. Archaeal_example_seq: a single UniProt accession number of an archaeal protein assigned to a given protein family. Archaeal_taxa: the number of archaeal species encoding proteins assigned to a given family. Bacterial_taxa: the number of bacterial species that contain homologs of a given archaeal protein family based on BLAST comparisons. Putative_transporter: a classification of whether or not a given protein family likely constitutes a transporter based on TCDB overlap and the presence of transporter-associated PFAM domains. Transporter_PFAMs: all PFAM domains assigned to a protein family that were assigned a transporter-associated domain. TopAnnotation: the majority-rule annotation for a given protein family assigned using eggNOG mapper. %withAnnot: the percentage of sequences that were assigned the majority-rule annotation. TotalAnnotSeqs: the number of sequences within the protein family that were successfully annotated. TotalSeqs: the total number of sequences analysed. (XLSX)