Additional file 1 of Temporal responses of conserved miRNAs to drought and their associations with drought tolerance and productivity in rice

Additional file 1: Table S1. Agronomic traits measure among six rice genotypes in drought-treated and well-watered fields. * and ** indicate significant differences at p < 0.05 and p < 0.01 by independent t test between samples from drought and well-watered fields. NA is short for “not available”. Table S2. Content of H2O2 (mmol/g FW) measured among six rice genotypes in drought and well-watered fields. * indicates significant differences at p < 0.05 by independent t test between samples from drought and well-watered fields. Table S3. Osmotic potential measured among six rice genotypes in drought and well-watered fields. * and ** indicate significant differences at p < 0.05 and p < 0.01 by independent t test between samples from drought and well-watered fields. Table S4. Total anti-oxidant capacity (U/g FW) measured among six rice genotypes in drought and well-watered fields. * and ** indicate significant differences at p < 0.05 and p < 0.01 by independent t test between samples from drought and well-watered fields. Table S5. Basic information for sequenced samples. Table S6. Number of expressed, available, drought-responsive miRNAs (DRMs), and recovery-related miRNAs (RRMs). Table S7. Validation of expression patterns and correlation-based predictions by former functionally characterized miRNAs in rice. Table S8. Number of recovery-related miRNAs in five regulation patterns from timepoint D5 to recovery stage (R). Table S9. Number of recovery-related miRNAs (RRMs) in five regulation patterns from timepoint D5 to recovery stage (R). “Varied” indicates the regulation of a miRNA varies among genotypes. Table S10. Target genes predicted by TargetFinder and psRobot for drought-responsive miRNAs. GDP is short for growth, development, and reproduction. DT is short for drought tolerance. NA is short for not assigned. Table S11. Number of predicted target genes of differentially expressed miRNAs in drought responsive genes (DRGs) with different Pearson’s Correlation Coefficient (PCC) values. Table S12. Target genes predicted for miR408-3p and miR408-5p and their PPC values in correlations between miRNA and mRNA. Table S13. Pearson’s correlation coefficients (PCCs) of genes related to plant height (PH) and drought-tolerance (DT) with OsmiR1870-3p and OsmiR1870-5p. Table S14. Basic information for six rice genotypes. Table S15. Information for RNA-sequenced samples. Table S16. Primers of six miRNAs and the reference (U6) for qPCR. Table S17. List of GDP (growth, development, and reproduction)- and DT (drought-tolerance)-associated drought-responsive genes. These DT-associated genes have been functionally characterized. These GDP-associated genes are related to plant height, number of tillers, grain yield, and biomass by former studies.