Additional file 3 of Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome

Additional file 2: Table S1. The metadata of 109 Lp082 isolates (mutants). Table S2. The detailed summary of 71 SNPs computationally identified from Lp082 isolate genomes. Table S3. The Lp082 genes under the parallel evolution. Table S4. The Average Nucleotide Identity (ANI) profiling of 103 bacterial genomes (including Lp082) from Lactiplantibacillus plantarum. Table S5. Mobile elements related to Lp082 isolates. Table S6. The microbial taxonomic profiles of all fecal metagenome samples. Table S7. The microbial metabolic functional profiles of all fecal metagenome samples. Table S8. The number of SNPs annotated in the resident gut microbes. Table S9. The detailed summary of SNPs in the resident gut microbes that correlated with Lp082’s abundance.