Output file from https://github.com/KyleTDavid/NGS/blob/master/get_lineage.py Reports lineage for each NCBI taxa ID included in analysis, required for https://github.com/KyleTDavid/NGS/blob/master/get
Accompanying files to the publication "CladeOScope: elucidating functional interactions via a clade co-evolution prism" The files attached here constitute the phylogenetic profiling matrices require
Intermediate files required to recreate figure 3, figure 5, and supplemental figure 7 from "Re-evaluating the salty divide: phylogenetic specificity of transitions between marine and freshwater system
There are also three situations to consider for the components of this taxon in the given area of reference (lines): monophyletic, paraphyletic or polyphyletic. To explain the table, we consider again
