MRIQC Derivatives for SpaceTop
收藏OpenNeuro2025-09-18 更新2026-03-14 收录
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https://openneuro.org/datasets/ds006692
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资源简介：
# ds005256 - MRIQC derivatives
This dataset is a BIDS Derivatives dataset resulting from running MRIQC on [ds005256](https://openneuro.org/datasets/ds005256).
## Methods
MRIQC documentation can be found on <https://mriqc.readthedocs.io/>.
A containerized version of MRIQC is stored in code/containers/mriqc_24_0_2.sif. This container was built using
```shell
apptainer build code/containers/mriqc_24_0_2.sif docker://nipreps/mriqc:24.0.2
```
Products were generated with the [Slurm](https://slurm.schedmd.com/overview.html) script [`code/run`](code/run). That script uses [Slurm arrays](https://slurm.schedmd.com/job_array.html) to process participants in parallel (one participant per job). Slurm logs (combined `stdout` and `stderr`) are stored in `logs/$SLURM_ARRAY_TASK_ID.log`. Running all participants would entail setting the `array` argument during the call to `sbatch`.
```shell
sbatch --array=0-116 code/run
```
Derivatives were saved in the dataset with `git/git-annex` using [`code/save`](code/save). For example, to save sub-0133, run the following.
```shell
# NOTE: the argument (116) is the SLURM_ARRAY_TASK_ID, not the participant_label
./code/save 116
```
### Environment
```shell
$ apptainer --version
apptainer version 1.2.2-2.el8
```
### Caveats
Some of the logs contain lines that reflect an outdated organization of this dataset. Initially, the outputs were stored in derivatives/mriqc, with the logs being written to derivatives/mriqc-logs.
Initially, the logs generated by MRIQC (`logs/config*toml` and `logs/mriqc*log`) were not captured in the automated addition of products. So, those logs are not included in the commits that added participants' outputs. The missing logs have been added in a bulk commit.
At the time of writing, most MRIQC products are not covered by BIDS, and so most of this dataset is covered by a [`.bidsignore`](.bidsignore).
## Acknowledgements
These derivatives were generated on the [Texas Advanced Computing Center](https://www.tacc.utexas.edu/) Lonestar6 computing system.
创建时间：
2025-09-18
