Minimal dataset for "Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models"

This repository contains a minimal data set to reproduce all results that don't compromise the privacy concerns for the manuscript "Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models".<br> <br> The repository contains the following data: adaptscore_acute.csv A csv file that contains the estimated adaptation scores for the acute data set with HLA I model. adaptscore_leftout.csv A csv file that contains the estimated adaptation scores for the leftout data set with the joint HLA I and HLA II model adaptscore_training.csv A csv file that contains the estimated adaptation scores for the traininig data set with the joint HLA I and HLA II model adaptscore_training_hla1_without_clin.csv A csv file that contains the estimated adaptation scores for the training data set with the HLA I model (via cross-validation) adaptscore_training_seed2.csv A csv file that contains the estimated adaptation scores for the training data set with the joint HLA I and HLA II model via cross-validation with another seed