Inferring virus-host interactions through multi-omics high-resolution time series Project Data

This resource contains data originating from the JGI project, "Inferring virus-host interactions through multi-omics high-resolution time series" (see award and files). img_data_integration.md explains various files in this record and shows how they were generated, including the code. img_data.tsv.gz contains gene-level data from assembled metatranscriptomic transcripts. The table merges data products generated by the IMG Annotation Pipeline (v5.0.23). There are 104 metatranscriptomic samples that are included with sample metadata. cast_ctd.csv contains oceanographic measurements collected by CTD rosette concomitantly with the metatranscriptomic samples. INVIRT19_metaT_metadata.txt contains metatranscriptomic sample metadata provided by Daniel Muratore that also applies to the samples in the paper, "Diel partitioning in microbial phosphorus acquisition in the Sargasso Sea." all_casts.csv contains cast CTD data, including for casts used for collecting bottle samples for metatranscriptomics. cognames2003-2014.tab, tigr_names.txt, and ko_list.txt contain function names used in img_data.tsv. v3 adds cast CTD data from all_casts.csv for the closest depths to the metatranscriptomic samples to img_data.tsv.