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Pathways for Arene Oxidation in Non-Heme Diiron Enzymes: Lessons from Computational Studies on Benzoyl Coenzyme A Epoxidase

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NIAID Data Ecosystem2026-03-09 收录
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https://figshare.com/articles/dataset/Pathways_for_Arene_Oxidation_in_Non-Heme_Diiron_Enzymes_Lessons_from_Computational_Studies_on_Benzoyl_Coenzyme_A_Epoxidase/4123371
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Oxygenation of aromatic rings using O2 is catalyzed by several non-heme carboxylate-bridged diiron enzymes. In order to provide a general mechanistic description for these reactions, computational studies were carried out at the ONIOM­(B3LYP/BP86/Amber) level on the non-heme diiron enzyme benzoyl coenzyme A epoxidase, BoxB. The calculations revealed four possible pathways for attacking the aromatic ring: (a) electrophilic (2e–) attack by a bis­(μ-oxo)-diiron­(IV) species (Q pathway); (b) electrophilic (2e–) attack via the σ* orbital of a μ-η2:η2-peroxo-diiron­(III) intermediate (Pσ* pathway); (c) radical (1e–) attack via the π*-orbital of a superoxo-diiron­(II,III) species (Pπ* pathway); (d) radical (1e–) attack of a partially quenched bis­(μ-oxo)-diiron­(IV) intermediate (Q′ pathway). The results allowed earlier work of de Visser on olefin epoxidation by diiron complexes and QM-cluster studies of Liao and Siegbahn on BoxB to be put into a broader perspective. Parallels with epoxidation using organic peracids were also examined. Specifically for the BoxB enzyme, the Q pathway was found to be the most preferred, but the corresponding bis­(μ-oxo)-diiron­(IV) species is significantly destabilized and not expected to be directly observable. Epoxidation via the Pσ* pathway represents an energetically somewhat higher lying alternative; possible strategies for experimental discrimination are discussed. The selectivity toward epoxidation is shown to stem from a combination of inherent electronic properties of the thioacyl substituent and enzymatic constraints. Possible implications of the results for toluene monooxygenases are considered as well.
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2016-11-03
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