Supplemental Material for Nyine et al., 2018

Figure
S1 is the workflow for SNP imputation in wheat. File S1.txt contains SNP HapMap
used in genome-wide association and genomic prediction. Table S1 contains a summary
of GBS data generated for the winter wheat diversity panel. Table S2 shows the
phenotypes collected for stripe rust resistance. Table S3 contains the pair-wise
Pearson’s correlation coefficient for stripe rust resistance phenotypic values.
Table S4 contains the significant marker-trait associations obtained in the
GWAS of resistance to wheat stripe rust. Table S5 shows the overlap of
identified GWAS signals with SNP previously shown to be associated with
resistance to wheat stripe rust. Table S6 shows the association of the Ventriup
marker with stripe rust resistance. Table S7 contains a list of SNP
significantly associated with stripe rust resistance and showing high LD (r2
> 0.5) with the Ventriup marker.