Melophagus metatranscriptome

Supplementary files: Supplementary_file_1_AM_expression.xls Supplementary_file_2_MO_expression.xlsSupplementary_file_3_immunity.pdf Supplementary_file_4_data_and_mapping_statistics.doc Additional files:(1) Trinity.fasta & Trinity.fasta.transdecoder.pepMeta-transcriptome assembly for M. ovinus, including predicted proteins. (2) Trinity_expressed_decontaminated.fasta & Trinity_expressed_decontaminated.fasta.transdecoder.pepFiltered reference transcriptome assembly (including proteome) for M. ovinus. Bacterial, kinetoplastid, and chordate transcripts were removed and only transcripts with digital expression > 1 were retained. (3) trinotate_annotation_report.xlsAnnotation report for all the transcripts. (4) TrinotateWeb.sqliteTrinotateWeb.sqlite database with complete data for M. ovinus analyses. (5) Supplementary figures with quality check analyses for individual samples/replicates and non-interactive differential expression visualization (Volcano and MA plots). (6) AME_300418.gbkArsenophonus melophagi genbank file with updated pseudogene calls. (7) AME_pathways.pdfCellular overview of A. melophagi with enzymatic steps filled by heatmap colors according to their FPKM expression (log scale).