SQUID manuscript workflow with outputs

This repository reproduces the analysis performed in for our method SQUID (Surrogate Quantitative Interpretability for Deepnets; Seitz, McCandlish, Kinney and Koo). It contains tools to apply SQUID on several previously-published genomic models, and compare its results to existing attribution methods. The scripts contained in this release are a replica of those found in the current release of our GitHub repository (https://github.com/evanseitz/squid-manuscript as of commit 5b47a7d), with the addition that all intermediate and final outputs are provided here.