Fst analysis for SNPs under selection.

List of significant SNPs under selection (log10 posterior odds (PO) > 0.5) for chromosomes 3 and 8. SNPs were found after comparison of the whole population (pop). Rows highlighted in yellow denote SNPs overlapping with core-QTL intervals (QTL). Rows highlighted in green show SNPs that lie within a region that encompasses a coding sequence in an interval of +/- 5 kb. Prob signifies the posterior probability for the model including selection. log10(PO), the logarithm of Posterior Odds to base 10 for the model including selection. Alpha is the estimated alpha coefficient indicating the strength and direction of selection. Fst is the coefficient estimated by BayeScanFST. The established function according to MaizeGDB or a tentative description inferred from the function of the rice/sorghum/Arabidopsis orthologs are also shown. (XLSX)