Data for: Long-term fertilization rather than plant species shapes rhizosphere and bulk soil prokaryotic communities in agroecosystems

These are the results on V4 16S amplicon high-throughput Illumina sequencing of bulk soil and rhizosphere prokaryotic communities under long-term organic and mineral fertilization. Description of the experiment and indexes of the collected samples are described in the manuscript "Long-term fertilization rather than plant species shapes rhizosphere and bulk soil prokaryotic communities in agroecosystems".