HMM code and input files

Contains data and code to run an HMM optimisation for Hermes insertion data. Contains: The predictors of insertion density:predictors.2016-10-06.tar.gzincludes:insertion motif similarity score (IMSS)nucleosome density scores hidden Markov Model R code transposon-hmm-7-cross-validation.R sample config filelog.III.5A.tr-even.config.r #the code is run like so:cat transposon-hmm-7-cross-validation.R | \R --slave --args config.r input.Rda We also include: sample input files: all-log.and-predictors.2016-10-06.txt.Rda Sample output files: log.all-model5A.hmmresult.table.Rda Hermes-containing read mapping scores:mapping.scores.txt.gz