Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices
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下载链接：
https://zenodo.org/record/7314837
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资源简介：
This dataset contains the curated nanopore raw signal data in BLOW5 format used to benchmark Hardware Accelerated Read Until (HARU). This dataset was created by using the publicly available datasets: SARS-CoV-2 SP1 (1.382M reads) and NA12878 PromethION subset (500,000 reads). The tarball when extracted will have the following directory structure:
haru-data
├── na12878-rfc1
│ ├── blow5-rawsignal
│ │ ├── na12878_dna_0.blow5
│ │ ├── na12878_dna_100.blow5
│ │ ├── na12878_dna_101.blow5
│ │ ├── na12878_dna_102.blow5
│ │ ├── ...
│ └── reference
│ └── rfc1.fa
└── SARS-CoV-2-sp1
├── blow5-rawsignal
│ ├── readgroup0
│ │ ├── reads_0_0.blow5
│ │ ├── reads_0_10.blow5
│ │ ├── reads_0_11.blow5
│ │ ├── reads_0_12.blow5
│ │ ├── ...
│ └── readgroup1
│ ├── reads_1_0.blow5
│ ├── reads_1_10.blow5
│ ├── reads_1_11.blow5
│ ├── ....
└── reference
└── nCoV-2019.reference.fasta
nCoV-2019.reference.fasta is the SARS-CoV-2 MN908947.3 reference genome. rfc1.fa is the genomic region hr4:39262456-39391375 extracted from hg38 human genome.
创建时间：
2023-05-13
