Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices

This dataset contains the curated nanopore raw signal data in BLOW5 format used to benchmark Hardware Accelerated Read Until (HARU). This dataset was created by using the publicly available datasets: SARS-CoV-2 SP1 (1.382M reads) and NA12878 PromethION subset (500,000 reads). The tarball when extracted will have the following directory structure: haru-data ├── na12878-rfc1 │ ├── blow5-rawsignal │ │ ├── na12878_dna_0.blow5 │ │ ├── na12878_dna_100.blow5 │ │ ├── na12878_dna_101.blow5 │ │ ├── na12878_dna_102.blow5 │ │ ├── ... │ └── reference │ └── rfc1.fa └── SARS-CoV-2-sp1 ├── blow5-rawsignal │ ├── readgroup0 │ │ ├── reads_0_0.blow5 │ │ ├── reads_0_10.blow5 │ │ ├── reads_0_11.blow5 │ │ ├── reads_0_12.blow5 │ │ ├── ... │ └── readgroup1 │ ├── reads_1_0.blow5 │ ├── reads_1_10.blow5 │ ├── reads_1_11.blow5 │ ├── .... └── reference └── nCoV-2019.reference.fasta nCoV-2019.reference.fasta is the SARS-CoV-2 MN908947.3 reference genome. rfc1.fa is the genomic region hr4:39262456-39391375 extracted from hg38 human genome.