Pseudocode for sORFs workflow. This file contains a pseudocode for finding sORFs workflow using Linux environment using BASH, PYTHON and the Perl programming language. (ZIP 8 kb)
The nucleotide start and stop codon positions for the SpaA1 ORFs are indicated; for the alternative ORF47, gene coordinates of BceA1 also are provided. Best matches are shown for four Bacillus genomes
tRNAs decoding standard 20 AA 61 Selenocysteine tRNAs (TCA) 0 Possible suppressor tRNAs (CTA,TTA,TCA) 0 tRNAs with undetermined or unknown isotypes 0 Predicted pseudogenes 1 Total tRNAs 62
tRNAs decoding standard 20 AA 70 Selenocysteine tRNAs (TCA) 0 Possible suppressor tRNAs (CTA,TTA,TCA) 0 tRNAs with undetermined or unknown isotypes 0 Predicted pseudogenes 0 Total tRNAs 70
