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Outputs from CODEML (part of the PAML package).
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2015-01-01
相关数据集
Parameter estimates and log-likelihood values under different models of variable ω ratios among sites. Site numbers and amino acids refer to the M. galloprovincialis sequence.
Parameter estimates and log-likelihood values under different models of variable ω ratios among sites. Site numbers and amino acids refer to the M. galloprovincialis sequence.
NIAID Data Ecosystem60
Parameter estimates and tests of selection for phylogenetic analysis of variation in the ω = d N / d S ratio in the carotenoid biosynthesis pathway.
M0 is a model that assumes a constant ω ratio for all phylogenetic branches and all codons. M1 and M2 are branch models that assume variations in the ω ratio in the phylogeny, but consider a constant
NIAID Data Ecosystem50
Additional file 5: Table S4. of Genome-wide analysis of the TPX2 family proteins in Eucalyptus grandis
The Ka/Ks ratios and Evolutionary selection of paralogous TPX2 family proteins. Ks: number of synonymous substitutions per synonymous site; Ka: number of nonsynonymous substitutions per nonsynonymous
Figshare2016-12-14 更新30
Parameter estimates and log-likelihood values for Potamogeton rbcL under eight codon substitution models included in PAML.
athe proportion (pi) of codon sites with ωi. In models M7, M8 and M8A, ω was drawn from a beta distribution B(p, q) for a proportion (p0) of sites.
NIAID Data Ecosystem50
Parameter estimates and Log-likelihood values under models of variable ω ratios among branches and sites.
Comparisons across neutral and selective models of codon replacements were done with the set of concatenated genes encoding ribosomal proteins in lophotrochozoans using different foreground internal b
Figshare2015-12-02 更新40
