metaSPAdes 3.13.0 assembly of the CAMI 2 Mouse Gut Toy data set, samples 0-9, short reads

Assembly of the first 10 short read samples<br> <strong>Software: </strong>metaSPAdes<br> <strong>SoftwareVersion: </strong>3.13.0<br> <strong>DataURL: </strong> https://data.cami-challenge.org/participate<br> <strong>SoftwareURL:</strong> https://github.com/ablab/spades<br> <strong>ShortReadsUsed:</strong> True<br> <strong>LongReadsUsed:</strong> False<br> <strong>CommandUsed:</strong> conda create -n spades3130 spades=3.13.0-0<br> <br> Sample0=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_0/reads/anonymous_reads.fq.gz<br> Sample1=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_1/reads/anonymous_reads.fq.gz<br> Sample2=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_2/reads/anonymous_reads.fq.gz<br> Sample3=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_3/reads/anonymous_reads.fq.gz<br> Sample4=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_4/reads/anonymous_reads.fq.gz<br> Sample5=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_5/reads/anonymous_reads.fq.gz<br> Sample6=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_6/reads/anonymous_reads.fq.gz<br> Sample7=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_7/reads/anonymous_reads.fq.gz<br> Sample8=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_8/reads/anonymous_reads.fq.gz<br> Sample9=/path/to/19122017_mousegut_scaffolds/2017.12.29_11.37.26_sample_9/reads/anonymous_reads.fq.gz<br> <br> cat $Sample0 $Sample1 $Sample2 $Sample3 $Sample4 $Sample5 $Sample6 $Sample7 $Sample8 $Sample9 &gt; Samples0-9_anonymous_reads.fq.gz<br> <br> conda activate spades3130<br> /usr/bin/time -v metaspades.py --12 Samples0-9_anonymous_reads.fq.gz -o metaSPAdes3130-Sample0-9