Dataset - Campylomics, strain-typing metagenomics data

Raw data files for submission: "Metagenomic Strain-Typing Combined with Isolate  
Sequencing Provides Increased Resolution of the Genetic  
Diversity of Campylobacter jejuni Carriage in Wild Birds"

strainestDB.tar.xz files expand to rather large file sizes 6-12Gb

Code for workflow and additional description:
https://git.list.lu/malte.herold/campylomics_pipeline

contained:

additional tables (e.g. list of reference genomes, metadata), multiqc data

3 Cjejuni strainEST databases

Results of the workflow for the 3 databases: strainest_results

KMA results (the same for all 3 runs)

KMA database

sourmash distances of references genomes used for the strainest DBs

some files might still hold references to a 4th database CJC_CGC, not included here.