Dataset - Campylomics, strain-typing metagenomics data

Raw data files for submission: "Metagenomic Strain-Typing Combined with Isolate Sequencing Provides Increased Resolution of the Genetic Diversity of Campylobacter jejuni Carriage in Wild Birds" strainestDB.tar.xz files expand to rather large file sizes 6-12Gb Code for workflow and additional description: https://git.list.lu/malte.herold/campylomics_pipeline contained: additional tables (e.g. list of reference genomes, metadata), multiqc data 3 Cjejuni strainEST databases Results of the workflow for the 3 databases: strainest_results KMA results (the same for all 3 runs) KMA database sourmash distances of references genomes used for the strainest DBs some files might still hold references to a 4th database CJC_CGC, not included here.