Conditional FDR; SCZ loci given BD (SCZ|BD).

Independent complex or single gene loci (r2<0.2) with SNP(s) with a conditional FDR (condFDR)<0.05 in schizophrenia (SCZ) given the association in bipolar disorder (BD). We defined the most significant SCZ SNP in each LD block based on the minimum condFDR for BD. The most significant SNPs in each LD block are listed. All loci with SNPs with condFDR<0.05 were used to define the number of the loci. Chromosome location (Chr). SCZ FDR values<0.05 are in bold. †Same locus identified in previous SCZ genome-wide association studies. All data were first corrected for genomic inflation.