Eltham copper butterfly <i>Paralucia pyrodiscus</i>: scoping genetic rescue

This repository includes the data, text and supplementary material for the manuscript: Roitman, M., Gardner, M.G., New, T.R., Nguyen, T.T.T., Roycroft, E.J., Sunnucks, P., Yen, A.L., Harrisson, K.A., 2017. Assessing the scope for genetic rescue of an endangered butterfly: the case of the Eltham copper. Insect Conservation and Diversity 10, 399–414. Final version of the manuscript: Roitman_etal_ICD_final.docx Supplementary Material for the manuscript: icad12235-sup-0001-appendix.A.doc -- DNA extractions of larvae samples icad12235-sup-0002-appendix.B.pdf -- Primer sequences icad12235-sup-0003-appendix.C.doc -- Nuclear primer design icad12235-sup-0004-appendix.D.pdf -- PCR conditions icad12235-sup-0005-appendix.E.doc -- Summary of MIGRATE-N analysis icad12235-sup-0006-appendix.F.doc -- Genetic diversity statistics icad12235-sup-0007-appendix.G.doc -- Summary of *BEAST analysis in tree form icad12235-sup-0008-appendix.H.doc -- Summary of STRUCTURE analysis based on all P. pyrodiscus samples icad12235-sup-0009-appendix.I.pdf -- Sample information icad12235-sup-0009-appendix.I Sample database in excel form.xls Genotypes for nuclear sequencing data and results of GenAlEx analyses: Heterozygosity nuclear_KH.xlsx Mitochondrial sequencing data, in nexus format (‘traits’ are locations): Concatenated CO1 ND5 mitochondria.nex Nucleotide alignment CO1ND5_concatenated_traits.nex Nucleotide alignment CO1_Ktrimmed.nex Nucleotide alignment CO1_Ktrimmed_traits.nex Nucleotide alignment ND5_Ktrimmed.nex Nucleotide alignment ND5_Ktrimmed_traits.nex Phased nuclear sequences for five anonymous single copy nuclear loci, in nexus format: 63EA_phased.nex A7D8_phased.nex S5ZW_phased_updated.nex O3W6_phased_updated.nex Z5V8_phased.nex