LIPAC Test Trajectories: EphA2 and Notch1 in GM3-containing Membranes

# LIPAC Test Trajectories: EphA2 and Notch in GM3-containing Membranes ## Overview This dataset contains example molecular dynamics (MD) simulation trajectories for testing and demonstrating the LIPAC (Lipid-Protein Analysis with Causal inference) pipeline. These trajectories were used to validate the method in the manuscript "xxxx". ## Purpose These trajectories serve as: - **Test data** for the LIPAC pipeline (https://github.com/takeshi-sato-dev) ## Contents - **EphA2 system**: Dimerized EphA2 receptor in DIPC/DOPS/CHOL/SM/GM3 membrane - 2 protein copies for testing protein-specific effects - [5us simulation time] - **Notch system**: Tetrameric Notch receptor in DIPC/DIPS/CHOL/SM/GM3 membrane - 4 protein copies for testing hierarchical Bayesian models - [5us simulation time] ## File Format - Trajectory files: [.xtc] - Topology files: [.psf] ## Usage See LIPAC documentation for detailed tutorials using these trajectories. Citation If you use this data, please cite: [Your manuscript citation] Related Resources - LIPAC code: https://github.com/takeshi-sato-dev