CheckAMG database

Databases required to run CheckAMG. The annotation module ("checkamg annotate") and the de-novo module ("checkamg denovo") use separate databases, distributed as two independent archives, so the larger de-novo database is only downloaded when needed. CheckAMG_annotate_db_v1.1_20260316.tar.gz: profile HMM databases and their associated score cutoff files required by "checkamg annotate". Contains: *.hmm, *.h3m, *.h3i, *.h3f, and *.h3p files for each of KEGG, FOAM, Pfam-A, PHROGs, dbCAN (dbCAN_HMMdb_v14), METABOLIC_custom, and CAMPER KEGG_cutoffs.tsv: score cutoffs for KEGG KOfam HMMs FOAM_cutoffs.tsv: score cutoffs for FOAM HMMs CAMPER_cutoffs.tsv: score cutoffs for CAMPER HMMs METABOLIC_cutoffs.tsv: score cutoffs for METABOLIC_custom HMMs README.txt: dependent database versions and citations CheckAMG_denovo_db_v1_20260605.tar.gz: trained Protein Set Transformer (PST) model and precomputed reference data required by "checkamg denovo". Contains: checkAMG-PST_TL-P__large_4.20260605.ckpt: trained CheckAMG-PST model checkpoint checkAMG-PST_TL-P__large_4.20260605.PST-EMBED.h5: reference protein PST embeddings (with labels) checkAMG-PST_TL-P__large_4.20260605.PST-EMBED.index.faiss: FAISS index over the reference embeddings for nearest-neighbor search checkAMG-PST_TL-P__large_4.20260605.PST-EMBED.labels.h5: reference protein labels README.txt: model/database version and citation