Additional file 11 of Genome-wide association study identifies favorable SNP alleles and candidate genes for frost tolerance in pea

Additional file 11: Table S5. List of annotated genes underlying genome-wide association loci of frost tolerance in pea. Genes that were located in an interval of ±1 Mb on both sides of markers significantly detected by GWAS and markers in linkage disequilibrium (LD; r2 > 0.8) with the former ones, are listed. For each identified gene, the nearest marker significantly detected by GWAS (underlined font) or marker in LD with associated marker(s) (non-underlined font) is shown. The annotation of genes was extracted from Pisum sativum v.1a genome JBrowse available at https://urgi.versailles.inra.fr/Species/Pisum [39]. Genes positions in the pea genome assembly v.1a are presented by their assigned chromosomes and physical positions indicated in bp. Genes which are not assigned to one of the seven chromosomes, are represented by their physical positions on unanchored scaffolds. a: Annotation refined with the homologous gene from Medicago truncatula available on the Pisum sativum v.1a genome JBrowse, and whose corresponding gene function was identified from the Medicago truncatula v4.0 genome JBrowse available on www.medicagogenome.org . b: Annotation refined with the homologous gene from Glycine max available on the Pisum sativum v.1a genome JBrowse and whose corresponding gene function was identified from the genome v9.0 assembly V1.1 available on http://soykb.org/gene_card.php . c: Annotation refined with the predicted protein function of transcript sequences corresponding to mapped SNPs, extracted from Table S10 in Tayeh et al. [36].