Tissue differential expression profile of "De novo assembly of the Brown trout (Salmo trutta m. fario) brain and muscle transcriptome: transcript annotation, tissue differential expression profile and SNP discovery"

Muscle and Brain derived reads were mapped to ORF unigenes by TopHat. Tissue specific transcriptome expression analysis was performed by normalization of raw reads (FPKM, fragments per kilobase of exon per million fragments) obtained from both tissues, brain and muscle. Tissue expression threshold was set at FPKM≥0.5. This data set contains raw output from raw Cufflinks transcript expression analysis of brain (Raw_Cufflinks_Brain_transcript_expression.txt) and muscle (Raw_Cufflinks_Muscle_transcript_expression.txt) tissues, raw Cuffdiff transcript differential expression testing (Raw_Cuffdiff_Brain_Muscle_transcript_differential_expression_testing.txt) and procesed results of transcript differential expression testing at FDR<0.01 (Differentialy expressed non-redundant ORF unigenes at FDR<0.01.xlsx).