Supplementary files for "Identification and characterisation of antimicrobial peptides in parasitic helminths"

PhD thesis supplementary Excel files. Files provided in xlsx and CSV formats. Please contact [e-mail] for any issues regarding access to files. Supplementary File 1: SF1, Table 1: AMP query sequences used for construction of AMP group HMMs. SF1, Table 2: Genomic and transcriptomic datasets used in the study. All files were retrieved from Wormbase Parasite version 14. SF1, Table 3: AMP gene IDs identified from 134 nematode predicted protein datasets. SF1, Table 4: Number and relative abundance of putative AMP genes identified in this study. Supplementary File 2: SF2, Table 1: Lophotrochozoan-derived AMPs identified in literature search SF2, Table 2: Genomic and transcriptomic datasets utilised in the study. All files were retrieved from Wormbase Parasite version 14. SF2, Table 3: HMM query sequences used to build antimicrobial saposin profile SF2, Table 4: Flatworm Gene ID for Histone, Ubiquitin, B-Thymosin, Troponin and Filamin protein homologs. All gene IDs are from Wormbase Parasite version 14 SF2, Table 5: Identified putative antimicrobial SAPosin-Like Protein (SAPLIP) genes from flatworms Supplementary File 3: SF3, Table 1: Genomic datasets utilised in the study. All files were retrieved from Wormbase Parasite version 12. SF3, Table 2: Nematode AMP-LPs SF3, Table 3: Flatworm AMP-LPs Supplementary File 4: SF4, Table 1: Cecropin gene complement in eight Ascarididoidea species. Supplementary File 5: SF5, Table 1: Genomic and transcriptomic datasets utilised in the study. SF5, Table 2: Macin gene complement in 28 nematode species. Dataset files are embargoed until 31 July 2024 in line with thesis embargo.