five

Sars-Cov-2 and Mers sequences from human host with no unknown characters

收藏
NIAID Data Ecosystem2026-05-01 收录
下载链接:
http://datadryad.org/dataset/doi%253A10.5061%252Fdryad.9s4mw6mp2
下载链接
链接失效反馈
官方服务:
资源简介:
The datasets are organized as follows: first column, number of bases in a given sequence; second, third, fourth and fifth columns, number of bases of type A, C, G and T, respectively, in the same sequence.  1) Sars-Cov-2 dataset. This dataset contains number of bases for the complete genome sequences from a human host, with none unknown characters.  In the NCBI database, there are about 950.000 sequences with these characteristics. 2) Restricted Sars-Cov-2 dataset: This dataset contains number of bases for the complete sequences from a human host, with no unknown characters, with 29903 bases, that is of the same length as the reference sequence NC045512.2. We obtained, from the NCBI database, about 5600 sequences with such features. 3) Mers dataset: This dataset contains number of bases for the complete sequences of about 200 complete genome sequences from a human host, with no unknown characters. Methods Raw datasets are genome sequences retrieved from the National Center for Biotechnology Information (NCBI) database (https://www.ncbi.nlm.nih.gov). The sequences were filtered according to the following criteria: 1) Sars-Cov-2 dataset. This dataset contains complete genome sequences from a human host, with none unknown characters.  In the NCBI database, there are about 950.000 sequences with these characteristics. 2) Restricted Sars-Cov-2 dataset: This dataset contains complete genome sequences from a human host, with no unknown characters, with 29903 bases, that is of the same length as the reference sequence NC045512.2. We obtained, from the NCBI database, about 5600 sequences with such features. 3) Mers dataset: We selected about 200 complete genome sequences from a human host, with no unknown characters. Raw data have been processed through a C++ code (provided with the datsets) that reads a dataset of nucleic acid sequences in FASTA format and returns the number of bases in each sequence. The output file seqcount.txt contains a table organized as follows: first column, number of bases in a given sequence; second, third, fourth and fifth columns, number of bases of type A, C, G and T, respectively, in the same sequence. Each row reports the data calculated for successive sequences following the same order of the raw datasets.
创建时间:
2024-01-02
5,000+
优质数据集
54 个
任务类型
进入经典数据集
二维码
社区交流群

面向社区/商业的数据集话题

二维码
科研交流群

面向高校/科研机构的开源数据集话题

数据驱动未来

携手共赢发展

商业合作