Hierarchical territorial organization of IL1B intron 3 reveals compartmentalized intronic regulatory architectures

This repository contains all datasets generated and analyzed in support of the manuscript: "Hierarchical territorial organization of IL1B intron 3 reveals compartmentalized intronic regulatory architectures." The repository includes: • IL1B intron 3 FASTA sequences • Selected territorial microdomains (Z4C2, Z2C4, and Z2C6) • TFBS analyses generated using FIMO and JASPAR • RNA-binding protein interaction analyses • RNAfold outputs • RNAstructure outputs • trRosettaRNA structural reconstructions • Three-dimensional RNA models (*.pdb) • Supplementary tables • Manuscript and associated figures These materials are provided to ensure full reproducibility of the analyses described in the associated manuscript.