Protein prediction model notation.

For each training population, we built seven types of model for comparison. One standard elastic net regression, and six fine-mapped model sets with variable PIP threshold and LD filtering strategies. For fine-mapped models, SNPs must meet the minimum PIP threshold specified to be included as predictors. Additionally as our fine mapping software, DAP-G, clusters SNPs according to LD, we optionally filter clusters to only include the SNP with the highest PIP.
(XLSX)