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Metatranscriptomic sequencing of single mosquitos in California

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Figshare2020-02-11 更新2026-04-28 收录
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Data associated to a study of the microbiota of 148 single mosquitos gathered in California.This includes supporting data for manuscript figures and processed data files necessary for reproducing the analysis.Manifest:Supporting data for manuscript figures are named DataS* or TableS*. Additional files include:* Assembled contig files (contigs.zip)* CD-HIT-EST clusters of contigs > 500 base pairs long. (500_contigs_cluster.clstr)* Read counts per contig (contig_stats_all.tsv)* Least Common Ancestor (LCA) assignments for each contig from blast against nt/nr (contig_stats_lca.tsv)* Final taxonomic calls for each contig, after decontamination (contig_calls_decontam.tsv)* Mosquito genomes used for host subtraction (mosquito_genomes_ref.txt)* Viral segments found, grouped by genome, including sample and contig information. (virus.json)

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2020-02-11
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