Additional file 2 of Investigating the impact of database choice on the accuracy of metagenomic read classification for the rumen microbiome

Additional file 2: Table S3 A list of the Hungate genome files used to create the simulated data. Shown in the table are the Hungate genome files used to create the simulated data. They are separated into the complete (single-contig) and draft (multi-contig) genomes, as this meant they were treated differently. The tool InSilicoSeq was used to create the simulated data, and has the capability to handle draft genomes. The draft, multi-contig genomes were used with the --draft option, and the complete, single-contig genomes were used with the --genomes option. These are the same files added to the custom databases containing Hungate genome sequences (Hungate, RefHun, RefHunRUG and HunRUG).