A first genetic assessment of the newly introduced Isle Royale Gray Wolves (Canis lupus)
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A first genetic assessment of the newly introduced Isle Royale Gray Wolves (Canis lupus)<br> Samuel D. Hervey, Linda Y. Rutledge, Brent R. Patterson, Mark C. Romanski, John A. Vucetich, Jerrold L. Belant, Dean E. Beyer, Jr., and Kristin E. Brzeski HERVEY2021_SupplementaryFigures&Tables.docx<br> >>>>word document containing the referenced supplementary figures and tables from the main text <br> HERVEY2021_Microsatellites_ISRO&ReferenceSamples.csv<br> >>comma-delimited file with genotypes for each of the canid samples used for both population structure and genetic diversity estimates of Isle Royale founders and to inform the agent-based models assigned genotypes<br> ID = Identifier of canid sample<br> Location = Geographic region of canid sample<br> Species = Species assignment of canid sample<br> NOTE: All remaining columns represent each locus ID followed by "-1" or "-2" indicating the first or second allele of the genotype<br> NOTE: Empty cells ("-9") represent missing genotypes <br> HERVEY2021_ODD.docx<br> >>word document containing the full description of the agent-based model found in the main text as well as additional parameters that can be used to simulate alternative scenarios <br> HERVEY2021_ISROnetlogo.nlogo<br> >>netlogo file containing the agent-based model required for running all simulations of observed heterozygosity and inbreeding projections of the Isle Royale population<br> NOTE: A description of the model can be found in the Overview, Design Concepts, and Detail ("HERVEY2021_ODD.docx") supplementary file<br> NOTE: To run the agent-based simulation with multiple replicates and/or multiple treatments (e.g. migration = 0.0, 0.5, 1.0 with 100 replicates each) navigate to Tools>BehaviorSpace. <br> You will also find on this specific file the saved parameters for recreating Figure 4 from the main text, Figure 2 from the ODD, and Figure 3 from the ODD. <br> HERVEY2021_Reformatting_Netlogo_Output.R<br> >>R script file containing code for both reformatting the ouput file from Netlogo (if "data-ouput?" is set to On) and how to use R package 'pedigree' to calculate inbreeding coefficients
